PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099355.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 215aa    MW: 23478.1 Da    PI: 7.9961
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099355.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.33.2e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA  r+ +Pv+Gavg++++++++++q+
  XP_011099355.1   2 SCNGCRILRKGCSETCILRPCLqwiesAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_011099355.1  97 AVETVLR 103
                     *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.5991107IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSCNGCRILR KGCSETCILR PCLQWIESAE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALKPI PEFMGGESEP  120
DDASECTDMF KLQDPSLSPR PKVQKRRRFP DEPAKVMQLA DLDLSLTPGF QGKKMSPSAA  180
KRRLGSPSMN SEESLMTTCG DHHPATEIKL LNLFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146PKVQKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099355.11e-160PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN113e-85LBD37_ARATH; LOB domain-containing protein 37
TrEMBLK4BD511e-110K4BD51_SOLLC; Uncharacterized protein
STRINGSolyc02g092550.2.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-86LOB domain-containing protein 37